PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 673aa    MW: 74071 Da    PI: 9.7184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88.1e-111364146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46
                     ++ W t+E++ll++av+++G+++W+++a ++          t+ +c++++++
   XP_010524440.1 13 KQTWGTWEELLLACAVHRFGTDSWDSVAVELRkrtpslRSVTAASCRLKYLD 64
                     789*****************************55555544456666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.1E-61268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-41248IPR009057Homeodomain-like
SuperFamilySSF466893.25E-51370IPR009057Homeodomain-like
PfamPF002491.3E-101365IPR001005SANT/Myb domain
CDDcd001672.57E-61566No hitNo description
SMARTSM002971.4E-14131404IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.2E-15302419IPR001487Bromodomain
SuperFamilySSF473704.06E-15302411IPR001487Bromodomain
CDDcd043692.94E-14306399No hitNo description
PfamPF004395.8E-11312389IPR001487Bromodomain
PROSITE profilePS5001412.264314385IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MAKPENNENF PEKQTWGTWE ELLLACAVHR FGTDSWDSVA VELRKRTPSL RSVTAASCRL  60
KYLDLKRRFS RKPSAAEDDT ATEIPAVPWL DELRKLRVAE LRREVERYDL SISSLQLKVK  120
RLEEERERSI KEDETETENS DLDKIAEKKE SYRDSDENSG KPAVGPANQS VNESNSPDPK  180
GDEPGTGSED DNREEKVTKP DTGEPNRSAG DGKPAGEDSC RGSCESGAKE SAGNSGRIDP  240
GREAGDSGEL IESVAESKGG ASRGEEEAKE TSDVQSSASL PRKDEADNEE DQSPTVKGIP  300
FESQPLADFL EILQSQSSGS HFSRRLQSQE TPEYGKIIRQ HVDFEMIRTR LEEGWYAVST  360
GKFFRDLLLL INNVRVFYGK GSSEFKASEQ LNELVREQMA LKVQKPTSQP KEESSMVPKA  420
VPESSHPLSL KPRMSVPMIA CRKRSSLAAR SSAPVQKKLK MTPVVDEKPA TDMEDEEKTS  480
DKDEEPLISK KRMTRERTSS NTKRAANKNV KNRSKIDTTS NVGLPTKGRS PNDSSEPKKS  540
DQEKKGNTSA SSKKQSVATF LKRMKGGSSS DTTPETGKTN SGADSSNLKR GAEQRKNNSN  600
KDKADAGKTQ TSQKRTSGKK QTNEKGSPAK KSSGRAPKRA AAASSSPSPA KRGKEVAEKE  660
AGPSTRAKKR TRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524440.10.0PREDICTED: msx2-interacting protein-like
RefseqXP_010524448.10.0PREDICTED: msx2-interacting protein-like
TrEMBLV4LP560.0V4LP56_EUTSA; Uncharacterized protein
STRINGAl_scaffold_0005_27120.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein